PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_3550V3.2.p
Common NamePHYPADRAFT_229274
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 601aa    MW: 64851.8 Da    PI: 6.6873
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_3550V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.4e-06555577325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       ++ C +f+ +  C+ G++C F H
  Pp3c5_3550V3.2.p 555 RKACIYFSTSRGCRNGSSCAFLH 577
                       678******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.343552580IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4556578IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MPSQDVYPRQ SAFLDLSVYV LSLADSYIVK LVRLFAAEDA PAQSSIMLQD LLQAKKARFM  60
HALNPIVSVD LPPGFGPSSL MGVKPLVAPI LPSVSWRIPE CFKLDPTWLV MAGEESKEVF  120
AQKQRENRTL EAVYPRPSAI PESPAEPSEV QLPFDEDDSN TLIIPVVPLE DDELPEADDL  180
PTTSGSTYKS KQEPFSGLKS LSPPPGFLST SMPVKPRTWF PVAPLENNNL SLPAHTTPAY  240
GPPVTVNRNI IPPNGTVVQT TNMSNARTGS LGLPVRAAEG GTEPDVPAAA AAAYAALQQS  300
NDTTMIDREL LIKFLTNPSM LQSLSEKLAQ NPPGNYGVVN RRIPESVDHS GIGARGNGRV  360
WNPTVTEHAK SGQRHLETAV GITDPHMRHG YDRPPGFGAP SGANALGQAP PQPGQGYAHP  420
GPLTIQSLPL PNMPPPTSVG YDQSIVSGSG RPISQRDEQY YKDLISQHGK NEEDIWGAIG  480
VPETGNSYPG GGRPRASGLD REKRLGSAER TERPERTDSR ARWAGREDVD MAGLSIRQGD  540
GDQANRSGQS RGKSRKACIY FSTSRGCRNG SSCAFLHETN NAERAKRPKL EGKESNIGYR  600
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001764994.10.0predicted protein
TrEMBLA9SFA90.0A9SFA9_PHYPA; Predicted protein
STRINGPP1S72_333V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]